Cifonauta

marine biology image database

Database organization

Cifonauta photos and videos can be searched by basic information (metadata), such as species, place, author, size, etc. These tags organized by categories like photographic technique, life stage, habitat, etc, provides a more informative and interesting navigation. For example, you might want to look for dark-field crustacean larvae photos, or just browse through the adult forms of planktonik organisms. Image categorization and a description for each tag (with a random example) is below.

Taxa

The taxonomic information in this site does not adopt any particular classification scheme and is built automatically from ITIS database. From the taxon name (contained in the image) we can retrieve its full taxonomic hierarchy and generate a simple tree for browsing. Therefore, the classification might not be in accordance with latest findings of each area; it reflects, almost strictly, the data from ITIS. Only in some cases we employ the phylogeny proposed by the author (or expert) that identified the species.

Size

We arbitrarily created 5 classes of sizes to provide an idea of organisms' dimensions. Benthic fauna received additional size information: macrofauna, meiofauna e microfauna (see item Life mode, below). Landscape/habitat photos do not hold size information, but if they are showing an specific organism (barnacles on rocky shore, for example) a size class is provided. Size classes are:

Size Description Example
0.1 - 1.0 mm Embryos, larvae and planktonic creatures.
Embryo with 2 cells +
Embryo with 2 cells
<0.1 mm Unicellular organisms and details of multicellular organisms.
Tintinnid with agglutinated lorica +
Tintinnid with agglutinated lorica
>100 mm Even larger organisms.
10 - 100 mm Macroscopic organisms.
Brittle star +
Brittle star
1.0 - 10 mm Tiny creatures but visible at the naked eye.
Hydromedusa +
Hydromedusa

Photographic techniques

Different techniques used to capture the dataase images were divided in 4 categories.: submarine, macrophotography, landscape/seascape e microscopy. To embrace the variety of microscopy techiniques the latter was subdivided. This is the list of tags related to photographic techniques:

Technique Description Example
diving Photographs taken under water.
Sargentinho +
Sargentinho
Adult male guarding the nest with eggs.
landscape Depicts an environment.
Summit of São Sebastião +
Summit of São Sebastião
View of São Sebastião channel.
macrophotography Detail shot with a hand-held digital camera, usually of an organism in aquarium.
Scyphozoan +
Scyphozoan
Adult medusa.
mev Scanning electron microscopy.
Hydroid +
Hydroid
Colony on a brown algae.
submarine
microscopy
bright field transmitted light illumination in which the sample appears dark in a bright background
Sea urchin +
Sea urchin
Detail of spines and pedicellariae.
confocal Confocal microscopy.
Pluteus larva of a sea biscuit +
Pluteus larva of a sea biscuit
dark field transmitted illumination in which the light beam scatters as it hits the specimen, so it appears bright against a dark background
Nudibranch (sea slug) +
Nudibranch (sea slug)
Differential interference contrast Microscopy technique used to enhance contrast in unstained, transparent samples (DIC).
Bryozoan coronate larva +
Bryozoan coronate larva
polarized light Polarized light microscopy reveals birefringent structures.
Juvenile sea biscuit +
Juvenile sea biscuit
Oral region with the lantern of Aristotle in formation.
protargol impregnation Silver impregnation technique.
Tintinnid with hyaline lorica +
Tintinnid with hyaline lorica
Variation on lorica shape.

Life stage

The organisms photographed are not always adults.

Stage Description Example
adult Sexually mature organism.
Isopod crustacean associated with a soft coral +
Isopod crustacean associated with a soft coral
embryo Organism in its early stages of development.
Ectodermic cells during blastula formation +
Ectodermic cells during blastula formation
gamete A mature sexual reproductive cell (sperm or egg)
juvenile Sexually immature organism that resembles an adult.
Juvenile sea biscuit +
Juvenile sea biscuit
Aboral surface (opposite to mouth).
larva Post-embryonic stage that usually differs from the adult stage in morphology, behavior, habitat, and others. Does not reproduce sexually.
Tubulariid hydroid +
Tubulariid hydroid
Actinula larva.
metamorphosis Change in shape and/or body structure that occurs between the larval and juvenile or adult.
Sea biscuit metamorphosis +
Sea biscuit metamorphosis
Polarized light highlights the calcareous skeleton showing the structure of spines, podia, and remnants of the larval skeleton.
paratomy
neriliidae polychaete +
neriliidae polychaete
progenesis
Polychaete dorvinelid +
Polychaete dorvinelid

Habitat

We also indicate the habitat of each organism whenever possible.

Habitat Description Example
artificial substrate
Ascidian +
Ascidian
Ascidians and other encrusting organisms.
baixio não vegetado
banco não vegetado
hard bottom
Donzela +
Donzela
Damselfish in the shadow of stone guarding the nest with eggs.
infralittoral Coastal region permanently submerged.
Gastrotrich +
Gastrotrich
intertidal Coastal region only exposed at low tide.
Sabellid polychaete +
Sabellid polychaete
mangrove Transition zone between land and sea, dominated by a typical vegetation that grows in areas that are frequently inundated with salt and fresh water.
Crested caracara +
Crested caracara
The crested caracara is a bird of prey with a varied diet including crabs and other invertebrates.
mesolitoral
rocky-shore Transition between marine and terrestrial environments formed by rocks.
Nudibranch (sea slug) +
Nudibranch (sea slug)
sand beach Landform along the shoreline consisting sand, gravel, or pebbles.
Protodrilid polychaete +
Protodrilid polychaete
soft bottom

Miscellaneous

Tags that do not fit into other categories. Could be common terms frequently searched.

Others Description Example
3d Image rendered in three dimensions.
3D projection of a sea biscuit pluteus larva 00:16 +
3D projection of a sea biscuit pluteus larva
Montagem de fotos de uma larva plúteos da bolacha-do-mar Clypeaster subdepressus mostrando sua tridimensionalidade.
alga Informal term for a diverse group of photosynthetic eukaryotic organisms, including unicellular (microalgae) to multicellular forms, like kelps and sargassum.
Hydroid +
Hydroid
Colony on a red algae.
cebimar-usp Images produced at the Center for Marine Biology of the University of São Paulo (CEBIMar/USP).
cnidarian tree of life project
Scyphozoan +
Scyphozoan
Adult medusa
coral Marine invertebrates within the class Anthozoa of the phylum Cnidaria, colonial or not, which secrete a hard, calcium carbonate skeleton.
Fire coral +
Fire coral
holotype The type specimen used in the original description of a species.
Hydroid +
Hydroid
Colony on the hydroid Lytocarpus filamentosus
introduced species A species living outside its native distributional range.
Invasive clam +
Invasive clam
Invasive bivalve
invasive species Non-indigenous species, or "non-native", plants or animals that adversely affect the habitats and regions they invade.
Tubiculous polychaete +
Tubiculous polychaete
Sabellid polychaete.
jellyfish Any of various gelatinous aquatic organisms, particularly the medusa stage of cnidarians.
Scyphozoan +
Scyphozoan
Adult medusa
medusoid a reduced or vestigial medusa
Hydroid +
Hydroid
Hydranths.
neotype
paratype The type specimen used in the original description of a species.
recruitment plate
risk of extinction A species that is likely to become extinct in the near future.
Balanoglossus gigas +
Balanoglossus gigas
Acorn worm (enteropneust) - marine burrowing wormlike invertebrate.
seto marine biological laboratory
Hydroid +
Hydroid
Details of polyps and branches.
symbiosis Organism living with, on, or in another, without injury to either.
Symbiotic copepod associated with a planktonic invertebrate +
Symbiotic copepod associated with a planktonic invertebrate
unicellular Organism having or consisting of a single cell.
Tintinnid with hyaline lorica +
Tintinnid with hyaline lorica